Commit d164e88d authored by Beatrice Tan's avatar Beatrice Tan

Update GISTIC2.smk

parent 24140414
......@@ -13,7 +13,7 @@ rule install_gistic:
rule run_gistic:
"""Run GISTIC2 for the tumor segmentation data."""
input:
os.path.join(config["gisticdir"], "gistic2"),
gistic_dir=os.path.join(config["gisticdir"], "gistic2"),
seg="Input/Segments_tumor.txt"
output:
"GISTIC/all_lesions.conf_" + config["gistic_precision"] + ".txt",
......
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