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Beatrice Tan
CNAprioritization
Commits
d164e88d
Commit
d164e88d
authored
Feb 01, 2018
by
Beatrice Tan
Browse files
Update GISTIC2.smk
parent
24140414
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1
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rules/GISTIC2.smk
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d164e88d
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@@ -13,7 +13,7 @@ rule install_gistic:
rule run_gistic:
"""Run GISTIC2 for the tumor segmentation data."""
input:
os.path.join(config["gisticdir"], "gistic2"),
gistic_dir=
os.path.join(config["gisticdir"], "gistic2"),
seg="Input/Segments_tumor.txt"
output:
"GISTIC/all_lesions.conf_" + config["gistic_precision"] + ".txt",
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