Commit 8a70edc2 authored by Beatrice Tan's avatar Beatrice Tan

Changed path into parameter.

parent e1120ae8
......@@ -11,7 +11,7 @@ class InputCircos:
def make_seg_file(self, seg, cir_seg):
""""Make input segmentation file."""
with open(cir_seg, 'w') as out:
with open("/home/beatrice/CNA_analysis/Input/Segments_tumor.txt", 'r') as segments:
with open(cir, 'r') as segments:
segments.readline()
for line in segments:
sample, chrom, start, end, nr_probes, seg_mean = line.strip().split("\t")
......
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