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Beatrice Tan
CNAprioritization
Commits
3c9a051b
Commit
3c9a051b
authored
Feb 01, 2018
by
Beatrice Tan
Browse files
Delete run_pipeline.sh
parent
1335a2e5
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run_pipeline.sh
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1335a2e5
#!/bin/bash
####Script to run snakemake
#If update environment fails (because environment does not exist), create environment
conda-env update
-n
CNAprioritization
-f
envs/pipeline.yaml
||
conda-env create
-n
CNAprioritization
-f
envs/pipeline.yaml
&&
source
activate CNAprioritization
&&
snakemake
-p
--use-conda
#bash run_pipeline_cluster.sh
source
deactivate CNAprioritization
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