Commit 3c9a051b authored by Beatrice Tan's avatar Beatrice Tan
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parent 1335a2e5
####Script to run snakemake
#If update environment fails (because environment does not exist), create environment
conda-env update -n CNAprioritization -f envs/pipeline.yaml || conda-env create -n CNAprioritization -f envs/pipeline.yaml &&
source activate CNAprioritization &&
snakemake -p --use-conda
source deactivate CNAprioritization
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