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CNAprioritization
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Beatrice Tan
CNAprioritization
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2b030fc3
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2b030fc3
authored
Feb 01, 2018
by
Beatrice Tan
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@@ -25,7 +25,8 @@ cd CNAprioritization
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Use your own dataset as input by specifying "input_file".
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Leave all settings as default to use a test dataset on Skin Cutaneous Melanoma (SKCM) tumor samples.
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Download Firehose data for a tumor type of interest:
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Set cancer_type to tumor type abbreviation (see https://gdac.broadinstitute.org/ for all options), e.g. "SKCM"
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Set cancer_type to tumor type abbreviation, e.g. "SKCM"
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See https://gdac.broadinstitute.org/ for all options.
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Set date_data to the date of interest to specify which version of the dataset to use, e.g. "2016_07_15"
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See http://gdac.broadinstitute.org/runs/info/analyses__runs_list.html for older versions.
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