Skip to content
GitLab
Projects
Groups
Snippets
/
Help
Help
Support
Community forum
Keyboard shortcuts
?
Submit feedback
Contribute to GitLab
Sign in
Toggle navigation
Menu
Open sidebar
Beatrice Tan
CNAprioritization
Commits
2b030fc3
Commit
2b030fc3
authored
Feb 01, 2018
by
Beatrice Tan
Browse files
Update README.md
parent
36bea04a
Changes
1
Hide whitespace changes
Inline
Side-by-side
README.md
View file @
2b030fc3
...
...
@@ -25,7 +25,8 @@ cd CNAprioritization
-
Use your own dataset as input by specifying "input_file".
-
Leave all settings as default to use a test dataset on Skin Cutaneous Melanoma (SKCM) tumor samples.
-
Download Firehose data for a tumor type of interest:
-
Set cancer_type to tumor type abbreviation (see https://gdac.broadinstitute.org/ for all options), e.g. "SKCM"
-
Set cancer_type to tumor type abbreviation, e.g. "SKCM"
-
See https://gdac.broadinstitute.org/ for all options.
-
Set date_data to the date of interest to specify which version of the dataset to use, e.g. "2016_07_15"
-
See http://gdac.broadinstitute.org/runs/info/analyses__runs_list.html for older versions.
...
...
Write
Preview
Supports
Markdown
0%
Try again
or
attach a new file
.
Cancel
You are about to add
0
people
to the discussion. Proceed with caution.
Finish editing this message first!
Cancel
Please
register
or
sign in
to comment