Commit 2b030fc3 authored by Beatrice Tan's avatar Beatrice Tan

Update README.md

parent 36bea04a
......@@ -25,7 +25,8 @@ cd CNAprioritization
- Use your own dataset as input by specifying "input_file".
- Leave all settings as default to use a test dataset on Skin Cutaneous Melanoma (SKCM) tumor samples.
- Download Firehose data for a tumor type of interest:
- Set cancer_type to tumor type abbreviation (see https://gdac.broadinstitute.org/ for all options), e.g. "SKCM"
- Set cancer_type to tumor type abbreviation, e.g. "SKCM"
- See https://gdac.broadinstitute.org/ for all options.
- Set date_data to the date of interest to specify which version of the dataset to use, e.g. "2016_07_15"
- See http://gdac.broadinstitute.org/runs/info/analyses__runs_list.html for older versions.
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