Commit 24140414 authored by Beatrice Tan's avatar Beatrice Tan
Browse files

Update for GISTIC install.

parent 3aa9679c
......@@ -8,7 +8,7 @@ from import shell
#Convert file locations to absolute paths
segments = os.path.abspath(snakemake.input.seg)
gistic_dir = os.path.abspath(snakemake.input.gistic_directory)
gistic_dir = os.path.abspath(snakemake.input.gistic_directory).split("gistic2")[0]
outfolder = os.path.abspath(snakemake.output[0]).split("all_lesions")[0]
#Select reference file
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