Commit 1335a2e5 authored by Beatrice Tan's avatar Beatrice Tan

Update Snakefile

parent c831d14d
......@@ -42,11 +42,7 @@ onerror:
rule all:
"""Define desired output from pipeline."""
input:
"Samplesize/Report.txt",
#"Reports/Tools.txt",
#"Reports/Overlap_regions.bed"
#"Reports/Segments.txt",
#"GO/comparison.txt"
"Reports/Results.html"
rule help:
......@@ -65,7 +61,6 @@ rule report:
genes_both="Reports/Genes_both.txt",
genes_gistic="Reports/Genes_GISTIC2.txt",
genes_rubic="Reports/Genes_RUBIC.txt",
overlap="Reports/Overlap_genes.txt",
venn="Reports/Venn_overlap_genes.png",
swarmplot="Reports/Swarmplot_sizes.png",
circos="Reports/Circos/RecurrentRegions.png",
......
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