Update Snakefile

Snakefile

@@ -42,11 +42,7 @@ onerror:
 rule all:
     """Define desired output from pipeline."""
     input:
-        "Samplesize/Report.txt",
-        #"Reports/Tools.txt",
-        #"Reports/Overlap_regions.bed"
-        #"Reports/Segments.txt",
-        #"GO/comparison.txt"
+        "Reports/Results.html"
 
 
 rule help:
@@ -65,7 +61,6 @@ rule report:
         genes_both="Reports/Genes_both.txt",
         genes_gistic="Reports/Genes_GISTIC2.txt",
         genes_rubic="Reports/Genes_RUBIC.txt",
-        overlap="Reports/Overlap_genes.txt",
         venn="Reports/Venn_overlap_genes.png",
         swarmplot="Reports/Swarmplot_sizes.png",
         circos="Reports/Circos/RecurrentRegions.png",