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Beatrice Tan
CNAprioritization
Commits
0c50f100
Commit
0c50f100
authored
Feb 02, 2018
by
Tan
Browse files
Run cluster updated.
parent
690098a6
Changes
2
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Snakefile
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0c50f100
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@@ -4,7 +4,7 @@ configfile: "config.yaml"
#Add directory with scripts to the Python path
import sys
sys.path.insert(0, workflow.basedir + "/scripts")
import os.path
#Rules to run pipeline for prioritization of regions and genes.
include: "rules/PreprocessInput.smk"
...
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@@ -42,7 +42,8 @@ onerror:
rule all:
"""Define desired output from pipeline."""
input:
"Reports/Results.html"
os.path.join(config["gisticdir"], "gistic2")
#"Reports/Results.html"
rule help:
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run_pipeline_cluster.sh
View file @
0c50f100
...
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@@ -22,4 +22,4 @@ snakemake -p \
--max-jobs-per-second
10
\
--restart-times
3
\
--use-conda
\
--conda-prefix
~/.conda
--conda-prefix
~/.conda
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