Commit 0c50f100 authored by Tan's avatar Tan
Browse files

Run cluster updated.

parent 690098a6
......@@ -4,7 +4,7 @@ configfile: "config.yaml"
#Add directory with scripts to the Python path
import sys
sys.path.insert(0, workflow.basedir + "/scripts")
import os.path
#Rules to run pipeline for prioritization of regions and genes.
include: "rules/PreprocessInput.smk"
......@@ -42,7 +42,8 @@ onerror:
rule all:
"""Define desired output from pipeline."""
os.path.join(config["gisticdir"], "gistic2")
rule help:
......@@ -22,4 +22,4 @@ snakemake -p \
--max-jobs-per-second 10 \
--restart-times 3 \
--use-conda \
--conda-prefix ~/.conda
--conda-prefix ~/.conda
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