"""Compare locations of known genes, recurrent regions from RUBIC and recurrent regions from GISTIC2."""
input:
gistic="Reports/Circos/Zoom/GISTIC.txt", #all gistic regions
rubic="Reports/Circos/Zoom/RUBIC.txt", #all rubic regions
genes="Reports/Circos/Zoom/Genes.txt",
known="Reports/Locations_known_genes.bed", #use locations known genes to extract list of known genes and run rule for each gene maybe also not overlapping, but region around gene
# """Compare locations of known genes, recurrent regions from RUBIC and recurrent regions from GISTIC2."""
# input:
# gistic="Reports/Circos/Zoom/GISTIC.txt", #all gistic regions
# rubic="Reports/Circos/Zoom/RUBIC.txt", #all rubic regions
# genes="Reports/Circos/Zoom/Genes.txt",
# known="Reports/Locations_known_genes.bed", #use locations known genes to extract list of known genes and run rule for each gene maybe also not overlapping, but region around gene