Commit 49a252b0 authored by avandenheuvel1's avatar avandenheuvel1

Updated README.txt

parent 9a4cbac2
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This ShinyApp is specifically designed to visualize and browse the scRNAseq data of the 'Primary mononuclear myocyte' samples generated by the",span(strong("Van der Maarel-lab, LUMC, Dep. Human Genetics, Leiden, The Netherlands:")), "This data has been published in 'A van den Heuvel. et al. Human Molecular Genetics Nov 16, 2018'"),
Our scRNAseq data is analyzed to generate a Pseudotime Trajectory. For this, using each cell's own transcripome, we re-ordered all cells in the sample in such a way that they form a Branched Trajectory-like structure", span(strong("as depicted below"))),
This tool allows you to check the expression of any of your gene(s)-of-interest in the scRNAseq in general, but also to check what happens with this expression when a cell would progress in pseudotime."),
This ShinyApp is specifically designed to visualize and browse the scRNAseq data of the 'Primary mononuclear myocyte' samples generated by the "Van der Maarel-lab", LUMC, Dep. Human Genetics, Leiden, The Netherlands.
This data has been published in 'A van den Heuvel. et al. Human Molecular Genetics Nov 16, 2018' and is specifically focussed on understanding etiology and development of the muscular dystrophy FSHD.
Our scRNAseq data is analyzed to generate a Pseudotime Trajectory. For this, using each cell's own transcripome, we re-ordered all cells in the sample in such a way that they form a Branched Trajectory-like structure representing the FSHD cellular development.
This tool allows you to check the expression of any of your gene(s)-of-interest in the scRNAseq in general, but also to check what happens with this expression when a cell would progress in pseudotime.
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Generated by dr. Anita van den Heuvel, Human Genetics LUMC. Last update 27-01-2019,
Generated by dr. Anita van den Heuvel, Human Genetics LUMC. Last update 31-01-2019,
For Questions or Comments, please email to A.van_den_heuvel.HG@lumc.nl.
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